STRINGSTRING
XP_008439499.1 protein (Cucumis melo) - STRING interaction network
"XP_008439499.1" - Protein LSD1 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439499.1Protein LSD1 (171 aa)    
Predicted Functional Partners:
XP_008453836.1
Metacaspase-1-like isoform X1 (376 aa)
     
 
  0.808
XP_008438285.1
Metacaspase-1 (367 aa)
     
 
  0.808
XP_008455778.1
Metacaspase-9 (317 aa)
     
 
  0.780
XP_008459901.1
Uncharacterized protein LOC103498881 (134 aa)
     
 
  0.739
XP_008453148.1
Protein EDS1L-like; Senescence-associated carboxylesterase 101-like (608 aa)
           
  0.728
XP_008451264.1
Light-inducible protein CPRF2 (442 aa)
       
 
  0.712
XP_008448221.1
Vesicle-associated protein 4-2-like (265 aa)
           
  0.705
XP_008439916.1
Vesicle-associated protein 4-2 (257 aa)
           
  0.705
XP_008452494.1
Probable disease resistance protein At4g33300; Belongs to the disease resistance NB-LRR family (819 aa)
           
  0.703
XP_008462467.1
Pheophorbide a oxygenase, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 3 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns (545 aa)
           
  0.699
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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