STRINGSTRING
XP_008439503.1 protein (Cucumis melo) - STRING interaction network
"XP_008439503.1" - Subtilisin-like protease SBT2.3 in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439503.1Subtilisin-like protease SBT2.3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns; Belongs to the peptidase S8 family (842 aa)    
Predicted Functional Partners:
XP_008437819.1
Uncharacterized protein LOC103483134; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (256 aa)
           
  0.699
XP_008437817.1
Uncharacterized protein LOC103483133 isoform X1 (254 aa)
           
  0.699
XP_008461908.1
Uncharacterized protein LOC103500400 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns (311 aa)
         
  0.638
XP_008446340.1
Uncharacterized protein LOC103489109 isoform X1 (350 aa)
         
  0.638
XP_008444402.1
Uncharacterized protein LOC103487740 isoform X1 (304 aa)
         
  0.637
XP_008444544.1
Tetratricopeptide repeat protein 7B (717 aa)
           
  0.592
XP_008464046.1
Villin-1 (906 aa)
     
   
  0.573
XP_008455234.1
Nucleolar protein 10 (708 aa)
           
  0.572
XP_008451418.1
Protein SLOW WALKER 1; U3 small nucleolar RNA-associated protein 15 homolog (528 aa)
           
  0.572
XP_008437553.1
Uncharacterized protein LOC103482932; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns (350 aa)
         
  0.571
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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