STRINGSTRING
XP_008439555.1 protein (Cucumis melo) - STRING interaction network
"XP_008439555.1" - DNA-damage-repair/toleration protein DRT111, chloroplastic in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439555.1DNA-damage-repair/toleration protein DRT111, chloroplastic (372 aa)    
Predicted Functional Partners:
XP_008454766.1
ATP-dependent DNA helicase homolog RECG, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 6 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns (974 aa)
     
   
  0.962
XP_008462876.1
Splicing factor 3B subunit 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns (1262 aa)
     
 
  0.898
XP_008463190.1
SUPPRESSOR OF ABI3-5; RNA-binding protein 5 (979 aa)
     
 
  0.874
XP_008457156.1
methionine--tRNA ligase, cytoplasmic; Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family (804 aa)
     
   
  0.862
XP_008442733.1
Splicing factor 3A subunit 2 (341 aa)
     
 
  0.852
XP_008461195.1
LOW QUALITY PROTEIN- cell division cycle 5-like protein; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- deleted 1 base in 1 codon (1025 aa)
     
 
  0.849
XP_008453669.1
LOW QUALITY PROTEIN- cell division cycle 5-like protein; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (1018 aa)
     
 
  0.849
XP_008445587.1
Protein RRC1-like isoform X1; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon; deleted 2 bases in 1 codon (960 aa)
     
      0.840
XP_008437867.1
pre-rRNA-processing protein esf1 (736 aa)
     
   
  0.727
XP_008452641.1
Interferon-related developmental regulator 1 (442 aa)
     
   
  0.723
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (11%) [HD]