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XP_008439562.1 protein (Cucumis melo) - STRING interaction network
"XP_008439562.1" - FACT complex subunit SPT16 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439562.1FACT complex subunit SPT16; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns (1073 aa)    
Predicted Functional Partners:
XP_008443431.1
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (642 aa)
     
 
  0.999
XP_008462762.1
Helicase protein MOM1 (2546 aa)
     
 
  0.985
XP_008450914.1
RNA polymerase-associated protein CTR9 homolog (1077 aa)
     
 
  0.972
XP_008453742.1
RNA polymerase-associated protein RTF1 homolog (660 aa)
     
 
  0.972
XP_008448818.1
RNA polymerase-associated protein LEO1 (623 aa)
     
 
  0.971
XP_008449103.1
DNA topoisomerase 1-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (889 aa)
     
 
  0.949
XP_008466025.1
Transcription factor IWS1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 10 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns (509 aa)
     
 
  0.947
XP_008449672.1
chromodomain-helicase-DNA-binding protein 1 isoform X1 (1760 aa)
     
 
  0.945
XP_008438779.1
Chromatin structure-remodeling complex protein SYD isoform X1 (3309 aa)
     
 
  0.945
XP_008462415.1
LOW QUALITY PROTEIN- protein PAF1 homolog; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (705 aa)
     
 
  0.944
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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