STRINGSTRING
XP_008439580.1 protein (Cucumis melo) - STRING interaction network
"XP_008439580.1" - LOB domain-containing protein 12-like in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439580.1LOB domain-containing protein 12-like (240 aa)    
Predicted Functional Partners:
XP_008459693.1
Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 11% coverage of the annotated genomic feature by RNAseq alignments (200 aa)
       
 
0.643
XP_008459304.1
Homeobox-leucine zipper protein ATHB-20-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns (304 aa)
     
   
  0.425
XP_008460216.1
Protein indeterminate-domain 5, chloroplastic; Zinc finger protein MAGPIE isoform X1 (618 aa)
           
  0.422
XP_008459604.1
Ethylene-responsive transcription factor ERF021; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 4 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments (188 aa)
           
  0.422
XP_008448155.1
Protein FAR1-RELATED SEQUENCE 9 (550 aa)
           
  0.422
XP_008443767.1
Protein PHR1-LIKE 1-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments (444 aa)
           
  0.422
XP_008443124.1
Dehydration-responsive element-binding protein 2F; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns (330 aa)
           
  0.422
XP_008442137.1
Uncharacterized protein LOC103486085 isoform X1 (367 aa)
           
  0.422
XP_008451893.1
Protein FAR-RED ELONGATED HYPOCOTYL 3 (846 aa)
           
  0.422
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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