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XP_008439592.1 protein (Cucumis melo) - STRING interaction network
"XP_008439592.1" - Pentatricopeptide repeat-containing protein At1g09900 in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439592.1Pentatricopeptide repeat-containing protein At1g09900; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (847 aa)    
Predicted Functional Partners:
XP_008450865.1
CRM-domain containing factor CFM3, chloroplastic/mitochondrial; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns (844 aa)
     
   
  0.961
XP_008452289.1
Uncharacterized protein LOC103493359; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (350 aa)
           
  0.847
XP_008442031.1
Uncharacterized protein LOC103486014 (332 aa)
           
  0.847
XP_008437583.1
Uncharacterized protein LOC103482952 (1035 aa)
           
  0.725
XP_008445444.1
Protein SPIRAL1-like 1 (120 aa)
           
  0.615
XP_008447036.1
Guanine nucleotide-binding protein subunit beta-2 (377 aa)
       
 
  0.484
XP_008452792.1
Guanine nucleotide-binding protein alpha-1 subunit (392 aa)
           
  0.483
XP_008456284.1
Myb family transcription factor APL-like (362 aa)
           
  0.420
XP_008447069.1
Myb family transcription factor APL-like isoform X1 (379 aa)
           
  0.420
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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