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XP_008439614.1 protein (Cucumis melo) - STRING interaction network
"XP_008439614.1" - Transcription factor TCP2-like in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439614.1Transcription factor TCP2-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns (452 aa)    
Predicted Functional Partners:
XP_008441727.1
T-complex protein 1 subunit alpha; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (545 aa)
           
  0.630
XP_008450133.1
Transcription factor TCP20 (295 aa)
       
 
  0.603
XP_008438696.1
ARM REPEAT PROTEIN INTERACTING WITH ABF2 (703 aa)
       
 
  0.600
XP_008439796.1
Transcription factor VOZ1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 5 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns (483 aa)
           
  0.592
XP_008460004.1
F-box only protein 6 isoform X1 (463 aa)
           
  0.587
XP_008445643.1
GDT1-like protein 4 (230 aa)
           
  0.587
XP_008446113.1
Uncharacterized protein LOC103488937 (238 aa)
           
  0.579
XP_008443856.1
BTB/POZ domain-containing protein At2g24240 (446 aa)
           
  0.579
XP_008460149.1
Transcription factor TCP9; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (329 aa)
           
  0.576
XP_008456638.1
Transcription factor GAMYB (553 aa)
           
  0.571
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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