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XP_008439618.1 protein (Cucumis melo) - STRING interaction network
"XP_008439618.1" - F-box protein At5g46170-like in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439618.1F-box protein At5g46170-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 14 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns (407 aa)    
Predicted Functional Partners:
XP_008450599.1
F-box/LRR-repeat protein 3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (640 aa)
     
   
  0.629
XP_008445494.1
F-box/kelch-repeat protein At1g67480 (382 aa)
           
  0.613
XP_008463937.1
F-box/kelch-repeat protein At5g60570; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (376 aa)
           
  0.606
XP_008463851.1
F-box/kelch-repeat protein At5g60570-like (392 aa)
           
  0.606
XP_008460424.1
Probable methyltransferase PMT21 (602 aa)
           
  0.487
XP_008439583.1
CSC1-like protein ERD4; Uncharacterized membrane protein C2G11.09 (725 aa)
           
  0.420
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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