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XP_008439622.1 protein (Cucumis melo) - STRING interaction network
"XP_008439622.1" - Protein TIFY 5A in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439622.1Protein TIFY 5A; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (132 aa)    
Predicted Functional Partners:
XP_008450950.1
Protein TIFY 10A (229 aa)
     
 
  0.942
XP_008437879.1
LOW QUALITY PROTEIN- transcription factor bHLH13; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (619 aa)
     
 
  0.862
XP_008444911.1
GATA transcription factor 25; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns (293 aa)
           
  0.853
XP_008462277.1
Protein TIFY 10B-like (300 aa)
     
 
  0.816
XP_008462697.1
Ninja-family protein mc410-like (474 aa)
       
 
  0.780
XP_008458598.1
Ninja-family protein mc410 (491 aa)
       
 
  0.780
XP_008466122.1
Protein TIFY 6B-like isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 6 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns (307 aa)
     
 
  0.778
XP_008445467.1
Probable WRKY transcription factor 57 isoform X1 (309 aa)
       
 
  0.721
XP_008463217.1
Coronatine-insensitive protein 1 (587 aa)
           
  0.706
XP_008454191.1
Protein TOPLESS (1139 aa)
       
 
  0.694
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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