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XP_008439650.1 protein (Cucumis melo) - STRING interaction network
"XP_008439650.1" - High mobility group B protein 14 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439650.1High mobility group B protein 14; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns (162 aa)    
Predicted Functional Partners:
XP_008443431.1
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (642 aa)
       
 
  0.745
XP_008439562.1
FACT complex subunit SPT16; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns (1073 aa)
     
 
  0.719
XP_008462762.1
Helicase protein MOM1 (2546 aa)
     
 
  0.704
XP_008461070.1
Probable histone H2A variant 3 (209 aa)
     
 
  0.594
XP_008449356.1
Histone H2A variant 1 (136 aa)
     
 
  0.594
XP_008462335.1
DNA-directed RNA polymerase I subunit rpa49; Uncharacterized protein LOC103500711 (436 aa)
       
 
  0.539
XP_008449373.1
Histone H1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 60 ESTs, 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns (274 aa)
           
  0.510
XP_008447183.1
Histone H1-like (268 aa)
           
  0.510
XP_008438779.1
Chromatin structure-remodeling complex protein SYD isoform X1 (3309 aa)
       
 
  0.501
XP_008463223.1
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (320 aa)
       
 
  0.471
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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