STRINGSTRING
XP_008439666.1 protein (Cucumis melo) - STRING interaction network
"XP_008439666.1" - DNA-binding protein DDB_G0278111 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439666.1DNA-binding protein DDB_G0278111 (128 aa)    
Predicted Functional Partners:
XP_008467005.1
Probable prefoldin subunit 5 (91 aa)
   
      0.890
XP_008437670.1
Uncharacterized protein LOC103483010; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, 1 Protein, and 59% coverage of the annotated genomic feature by RNAseq alignments (181 aa)
   
      0.890
XP_008461845.1
60S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family (105 aa)
   
        0.883
XP_008461363.1
60S ribosomal protein L44 (105 aa)
   
        0.883
XP_008444032.1
Prefoldin subunit 6 (130 aa)
     
      0.869
XP_008462580.1
Probable small nuclear ribonucleoprotein G (80 aa)
     
        0.866
XP_008459030.1
Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family (235 aa)
     
        0.866
XP_008438968.1
Prefoldin subunit 3; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (194 aa)
     
        0.866
XP_008448918.1
RNA polymerase II transcription factor B subunit 5; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns (70 aa)
     
        0.862
XP_008450609.1
Malignant T-cell-amplified sequence 1 homolog (181 aa)
     
        0.833
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (13%) [HD]