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XP_008439667.1 protein (Cucumis melo) - STRING interaction network
"XP_008439667.1" - UPF0235 protein At5g63440 isoform X1 in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439667.1UPF0235 protein At5g63440 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 12 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (232 aa)    
Predicted Functional Partners:
XP_008442772.1
Cactin (683 aa)
       
 
  0.972
XP_008460008.1
Stress-associated endoplasmic reticulum protein 2-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns (68 aa)
     
   
  0.568
XP_008453056.1
Uncharacterized protein LOC103493878 (163 aa)
     
   
  0.568
XP_008461190.1
pre-mRNA-splicing factor ISY1 homolog (303 aa)
     
   
  0.509
XP_008456689.1
116 kDa U5 small nuclear ribonucleoprotein component-like (988 aa)
     
   
  0.499
XP_008466254.1
Uncharacterized protein LOC103503720 isoform X1 (188 aa)
     
   
  0.485
XP_008457690.1
NHP2-like protein 1 (128 aa)
     
   
  0.485
XP_008444011.1
NHP2-like protein 1 (128 aa)
     
   
  0.485
XP_008462238.1
Crooked neck-like protein 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns (703 aa)
     
   
  0.459
XP_008466508.1
Protein RCC2 homolog (543 aa)
     
   
  0.429
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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