STRINGSTRING
XP_008439688.1 protein (Cucumis melo) - STRING interaction network
"XP_008439688.1" - LOW QUALITY PROTEIN: uncharacterized protein LOC103484405 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439688.1LOW QUALITY PROTEIN- uncharacterized protein LOC103484405; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- substituted 1 base at 1 genomic stop codon (1243 aa)    
Predicted Functional Partners:
XP_008457710.1
Probable ubiquitin-conjugating enzyme E2 23 isoform X1; Belongs to the ubiquitin-conjugating enzyme family (1164 aa)
     
 
  0.748
XP_008464695.1
Uncharacterized protein LOC103502517 isoform X1; Vacuolar fusion protein CCZ1 homolog (417 aa)
     
   
  0.723
XP_008466025.1
Transcription factor IWS1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 10 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns (509 aa)
           
  0.719
XP_008458010.1
Chromatin modification-related protein EAF1 B; Uncharacterized protein LOC103497550 (1929 aa)
           
  0.719
XP_008438053.1
LOW QUALITY PROTEIN- mediator of RNA polymerase II transcription subunit 12; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- deleted 1 base in 1 codon (2255 aa)
           
  0.719
XP_008448163.1
Pentatricopeptide repeat-containing protein At2g03880, mitochondrial (624 aa)
           
  0.628
XP_008461528.1
Uncharacterized protein LOC103500100 (844 aa)
         
  0.541
XP_008460266.1
The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- substituted 1 base at 1 genomic stop codon (713 aa)
         
  0.541
XP_008460225.1
Uncharacterized protein LOC103499108; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (2802 aa)
         
  0.541
XP_008456865.1
Helicase SEN1-like (846 aa)
         
  0.541
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (9%) [HD]