STRINGSTRING
XP_008439722.1 protein (Cucumis melo) - STRING interaction network
"XP_008439722.1" - Ras-related protein RABA1c-like in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439722.1Ras-related protein RABA1c-like (218 aa)    
Predicted Functional Partners:
XP_008462692.1
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 (1083 aa)
   
 
  0.800
XP_008441050.1
Phosphatidylinositol 4-kinase beta 1; Belongs to the PI3/PI4-kinase family (1093 aa)
       
 
  0.784
XP_008452884.1
Transport protein particle subunit trs120 (1196 aa)
       
 
  0.682
XP_008437987.1
Exocyst complex component SEC10 (838 aa)
       
 
  0.667
XP_008456686.1
Exocyst complex component SEC6 (756 aa)
     
 
  0.649
XP_008455143.1
Guanosine nucleotide diphosphate dissociation inhibitor At5g09550; Belongs to the Rab GDI family (445 aa)
     
 
  0.644
XP_008441682.1
Guanosine nucleotide diphosphate dissociation inhibitor 2; Belongs to the Rab GDI family (444 aa)
     
 
  0.644
XP_008439063.1
Protein TPLATE (1160 aa)
           
  0.627
XP_008453824.1
Phospholipid scramblase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns; Belongs to the phospholipid scramblase family (366 aa)
       
 
  0.598
XP_008456050.1
Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation (941 aa)
           
  0.562
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (5%) [HD]