STRINGSTRING
XP_008439803.1 protein (Cucumis melo) - STRING interaction network
"XP_008439803.1" - Interferon-induced guanylate-binding protein 2 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439803.1Interferon-induced guanylate-binding protein 2 (1063 aa)    
Predicted Functional Partners:
XP_008452934.1
Large proline-rich protein bag6-B isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 9 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (922 aa)
     
   
  0.933
XP_008464081.1
Tropomyosin; Synaptonemal complex protein 1 isoform X1 (437 aa)
     
   
  0.903
XP_008442500.1
DNA ligase 1 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (216 aa)
           
  0.854
XP_008456646.1
Large proline-rich protein bag6-B; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 15 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (708 aa)
     
   
  0.723
XP_008461781.1
Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria (1424 aa)
     
   
  0.678
XP_008441344.1
Fidgetin-like protein 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns; Belongs to the AAA ATPase family (688 aa)
     
 
  0.649
XP_008438138.1
Spastin isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns; Belongs to the AAA ATPase family (490 aa)
     
 
  0.649
XP_008465160.1
DNA replication licensing factor MCM2; Belongs to the MCM family (944 aa)
     
   
  0.627
XP_008462989.1
Meiotic recombination protein SPO11-1 isoform X1 (386 aa)
           
  0.625
XP_008452405.1
Microtubule-associated protein 70-1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns (633 aa)
           
  0.621
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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