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XP_008439810.1 protein (Cucumis melo) - STRING interaction network
"XP_008439810.1" - homeobox-DDT domain protein RLT1 isoform X1 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439810.1homeobox-DDT domain protein RLT1 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 mRNAs, 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns (1753 aa)    
Predicted Functional Partners:
XP_008463366.1
Anaphase-promoting complex subunit 4 (774 aa)
     
        0.865
XP_008462001.1
Probable chromatin-remodeling complex ATPase chain (87 aa)
     
 
  0.670
XP_008458481.1
Putative chromatin-remodeling complex ATPase chain isoform X1 (1073 aa)
     
 
  0.670
XP_008459517.1
30-kDa cleavage and polyadenylation specificity factor 30-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (708 aa)
           
  0.630
XP_008445183.1
30-kDa cleavage and polyadenylation specificity factor 30; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns (710 aa)
           
  0.630
XP_008459727.1
Transcription factor UNE10 (490 aa)
           
  0.628
XP_008466392.1
Transcription factor HY5 (157 aa)
           
  0.574
bZIP2
Uncharacterized protein LOC103488299; Transcription factor HY5-like (158 aa)
           
  0.574
XP_008453601.1
AP2-like ethylene-responsive transcription factor AIL5 (475 aa)
           
  0.572
XP_008457500.1
Nodulin homeobox isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (939 aa)
     
   
  0.493
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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