STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csa_4G425730HTH myb-type domain-containing protein. (301 aa)    
Predicted Functional Partners:
Csa_4G000550
Uncharacterized protein.
  
     0.473
Csa_5G158500
Uncharacterized protein.
  
     0.457
Csa_3G036460
Uncharacterized protein.
  
     0.436
Csa_3G126100
Uncharacterized protein.
  
     0.423
Csa_2G350230
Uncharacterized protein.
  
     0.417
Csa_5G158540
Uncharacterized protein.
  
     0.409
Csa_4G107450
Uncharacterized protein.
  
     0.409
Csa_6G117700
SWIM-type domain-containing protein.
  
 
   0.402
Csa_1G057030
SWIM-type domain-containing protein.
  
 
   0.402
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.