STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csa_3G560210NAC domain-containing protein. (243 aa)    
Predicted Functional Partners:
Csa_3G345380
DRBM domain-containing protein.
  
 
   0.523
Csa_3G838760
RRM domain-containing protein.
  
     0.518
Csa_1G422440
XET_C domain-containing protein.
  
  
  0.507
Csa_1G407200
Uncharacterized protein.
  
     0.498
Csa_5G608220
Uncharacterized protein.
  
     0.495
Csa_5G148650
Uncharacterized protein.
  
 
  0.493
Csa_7G453500
Phytocyanin domain-containing protein.
  
  
  0.488
Csa_3G146490
AAI domain-containing protein; Belongs to the plant LTP family.
  
 
  0.477
Csa_1G536820
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
 
   0.477
Csa_5G623560
GRAS domain-containing protein; Belongs to the GRAS family.
  
     0.473
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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