STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0225TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; KEGG: sme:SMc02324 putative periplasmic binding ABC transporter protein. (329 aa)    
Predicted Functional Partners:
Smed_0228
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc03001 putative permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  0.984
Smed_0227
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc03000 putative permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  0.981
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
  0.968
Smed_0224
Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; regulatory protein DeoR; KEGG: sme:SMc02323 putative transcription regulator protein.
 
    0.879
Smed_0230
PFAM: carbohydrate kinase FGGY; KEGG: sme:SMc03003 hypothetical protein.
 
  
 0.860
rhaM
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
    0.854
Smed_0223
TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMc02322 short chain dehydrogenase.
 
     0.836
Smed_0222
TIGRFAM: L-rhamnose catabolism isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sme:SMc02321 putative sugar isomerase protein.
 
     0.799
Smed_3127
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: atc:AGR_C_3488 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family.
 
   0.513
Smed_0103
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02170 putative permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
   0.507
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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