STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1237PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sme:SMa1680 hypothetical protein. (802 aa)    
Predicted Functional Partners:
Smed_1238
KEGG: sme:SMa1682 NapD-like protein.
 
    0.906
Smed_1239
PFAM: sulfatase; KEGG: sme:SMa1683 putative arylsulfatase.
 
     0.870
Smed_2065
PFAM: sulfatase; KEGG: sus:Acid_1528 sulfatase.
 
     0.615
Smed_1276
PFAM: transcriptional regulator domain protein; Tetratricopeptide TPR_4; KEGG: sme:SMc01198 hypothetical protein.
 
   
 0.563
Smed_3015
PFAM: peptidase M23B; KEGG: sme:SMc03782 hypothetical signal peptide protein.
   
 
 0.560
Smed_2656
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sme:SMc03985 probable adenylate/guanylate cyclase protein.
 
   
 0.481
Smed_1942
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sme:SMc04292 probable adenylate/guanylate cyclase protein.
 
   
 0.477
Smed_1130
PFAM: sulfatase; KEGG: aor:AO090012000003 beta-glucosidase-related glycosidases Pfam: Sulfatase Glyco_hydro_3 Glyco_hydro_3_C FG-GAP.
 
     0.434
Smed_2885
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sme:SMc03099 putative adenylate cyclase protein.
 
   
 0.431
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.428
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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