STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDIG_25570RNA helicase/RNAse III, putative; Belongs to the helicase family. Dicer subfamily. (1372 aa)    
Predicted Functional Partners:
PDIG_81700
Eukaryotic translation initiation factor eIF-2C4, putative.
   
 0.926
PDIG_73860
Uncharacterized protein.
   
 0.925
PDIG_89570
Uncharacterized protein.
   
 0.925
PDIG_46070
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.824
PDIG_67500
37S ribosomal protein Mrp17.
   
 
 0.793
PDIG_42570
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.793
PDIG_33640
Mitochondrial ribosomal protein, putative.
  
 
 0.790
PDIG_11960
50S ribosomal subunit L30.
   
 
 0.789
PDIG_03220
Uncharacterized protein.
  
   0.786
PDIG_32340
Uncharacterized protein.
  
 
 0.779
Your Current Organism:
Penicillium digitatum
NCBI taxonomy Id: 1170229
Other names: P. digitatum PHI26, Penicillium digitatum PHI26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.