STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_0184PFAM: peptidase M2 peptidyl-dipeptidase A; KEGG: swi:Swit_2667 peptidyl-dipeptidase A. (609 aa)    
Predicted Functional Partners:
Caul_3661
PFAM: peptidase M20; peptidase M28; KEGG: ccr:CC_2544 aminopeptidase, putative.
 
   
 0.652
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
       0.532
Caul_0183
KEGG: mmr:Mmar10_2602 Flp pilus assembly protein TadG.
       0.522
Caul_0186
KEGG: mjl:Mjls_0568 hypothetical protein.
       0.512
metXA
Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.
  
    0.447
Caul_0655
PFAM: peptidase M20; peptidase M28; KEGG: xac:XAC0615 aminopeptidase.
 
   
 0.432
Caul_1725
Endothelin-converting enzyme 1; PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: sus:Acid_2789 endothelin-converting enzyme 1.
  
   
 0.426
Caul_3439
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: ccr:CC_2487 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.404
Caul_3852
TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: ccr:CC_2410 3-carboxy-cis,cis-muconate cycloisomerase.
  
    0.404
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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