STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_1704PFAM: ATP12 ATPase; KEGG: ccr:CC_1977 hypothetical protein. (250 aa)    
Predicted Functional Partners:
Caul_2561
PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: ccr:CC_1887 NADH-ubiquinone oxidoreductase.
  
   
 0.634
Caul_0938
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ccr:CC_0831 hypothetical protein.
  
     0.596
Caul_1705
PFAM: carboxyl transferase; KEGG: ccr:CC_1975 propionyl-CoA carboxylase beta chain.
     
 0.541
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
 
 0.509
Caul_0714
PFAM: heat shock protein DnaJ domain protein; KEGG: ccr:CC_3010 DnaJ-related protein.
  
 
 
 0.505
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
    0.492
Caul_0032
PFAM: protein of unknown function DUF448; KEGG: ccr:CC_0043 hypothetical protein.
  
    0.472
Caul_4144
Cobalt chelatase, pCobT subunit; KEGG: ccr:CC_0672 cobalamin biosynthesis protein; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A.
  
     0.465
Caul_3587
PFAM: conserved hypothetical protein; KEGG: ccr:CC_2345 hypothetical protein; Belongs to the UPF0262 family.
  
   
 0.435
Caul_3104
KEGG: ccr:CC_1987 hypothetical protein.
 
     0.416
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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