STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_2032TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: mlo:mlr6402 conjugal transfer protein; TrbL. (449 aa)    
Predicted Functional Partners:
Caul_2033
PFAM: Conjugal transfer protein; KEGG: ccr:CC_2687 conjugal transfer protein TrbF.
 
   
 0.950
Caul_2034
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: ccr:CC_2686 conjugal transfer protein TrbG.
 
   
 0.950
Caul_2035
PFAM: conjugation TrbI family protein; KEGG: ccr:CC_2685 conjugal transfer protein TrbI.
 
   
 0.950
Caul_2031
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: mlo:mlr6401 conjugal transfer protein TrbJ.
 
   
 0.924
Caul_2028
PFAM: Conjugal transfer protein TrbC; KEGG: azc:AZC_3859 conjugal transfer protein.
 
   
 0.923
Caul_2029
KEGG: pla:Plav_1837 putative conjugal transfer TrbD transmembrane protein.
 
   
 0.923
Caul_2030
PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: mlo:mlr6400 conjugal transfer protein trbE.
 
   
 0.923
Caul_2026
PFAM: CopG domain protein DNA-binding domain protein; KEGG: pla:Plav_1834 CopG domain protein DNA-binding domain protein.
 
     0.917
Caul_2025
PFAM: TRAG family protein; KEGG: mlo:mlr6395 conjugal transfer protein traG.
 
   
 0.904
Caul_2037
PFAM: protein of unknown function DUF736; KEGG: ccr:CC_2683 hypothetical protein.
 
     0.875
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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