STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_3823PFAM: Lytic transglycosylase catalytic; KEGG: xau:Xaut_2873 lytic transglycosylase catalytic. (310 aa)    
Predicted Functional Partners:
Caul_3822
PFAM: protein of unknown function DUF736; KEGG: xau:Xaut_2872 protein of unknown function DUF736.
 
     0.907
Caul_3821
KEGG: xau:Xaut_0756 putative conjugal transfer protein precursor.
 
     0.872
Caul_3820
KEGG: pla:Plav_3534 hypothetical protein.
 
     0.867
Caul_3819
KEGG: pla:Plav_3533 hypothetical protein.
 
     0.823
Caul_3824
KEGG: xau:Xaut_0752 hypothetical protein.
 
   
 0.801
Caul_3826
KEGG: xau:Xaut_0750 hypothetical protein.
 
    0.747
Caul_3818
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_3014 cobyrinic acid ac-diamide synthase.
 
     0.745
Caul_3831
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: xau:Xaut_2882 P-type conjugative transfer protein TrbJ.
 
   
 0.744
Caul_3813
KEGG: xau:Xaut_0762 hypothetical protein.
 
     0.741
Caul_3832
KEGG: xau:Xaut_2999 hypothetical protein.
 
     0.730
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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