Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Caul_3813 | Caul_3818 | KEGG: xau:Xaut_0762 hypothetical protein. | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_3014 cobyrinic acid ac-diamide synthase. | 0.410 |
Caul_3813 | Caul_3819 | KEGG: xau:Xaut_0762 hypothetical protein. | KEGG: pla:Plav_3533 hypothetical protein. | 0.676 |
Caul_3813 | Caul_3820 | KEGG: xau:Xaut_0762 hypothetical protein. | KEGG: pla:Plav_3534 hypothetical protein. | 0.812 |
Caul_3813 | Caul_3821 | KEGG: xau:Xaut_0762 hypothetical protein. | KEGG: xau:Xaut_0756 putative conjugal transfer protein precursor. | 0.804 |
Caul_3813 | Caul_3822 | KEGG: xau:Xaut_0762 hypothetical protein. | PFAM: protein of unknown function DUF736; KEGG: xau:Xaut_2872 protein of unknown function DUF736. | 0.804 |
Caul_3813 | Caul_3823 | KEGG: xau:Xaut_0762 hypothetical protein. | PFAM: Lytic transglycosylase catalytic; KEGG: xau:Xaut_2873 lytic transglycosylase catalytic. | 0.741 |
Caul_3813 | Caul_3824 | KEGG: xau:Xaut_0762 hypothetical protein. | KEGG: xau:Xaut_0752 hypothetical protein. | 0.793 |
Caul_3813 | Caul_3826 | KEGG: xau:Xaut_0762 hypothetical protein. | KEGG: xau:Xaut_0750 hypothetical protein. | 0.789 |
Caul_3813 | Caul_3831 | KEGG: xau:Xaut_0762 hypothetical protein. | TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: xau:Xaut_2882 P-type conjugative transfer protein TrbJ. | 0.751 |
Caul_3813 | Caul_3832 | KEGG: xau:Xaut_0762 hypothetical protein. | KEGG: xau:Xaut_2999 hypothetical protein. | 0.699 |
Caul_3818 | Caul_3813 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_3014 cobyrinic acid ac-diamide synthase. | KEGG: xau:Xaut_0762 hypothetical protein. | 0.410 |
Caul_3818 | Caul_3819 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_3014 cobyrinic acid ac-diamide synthase. | KEGG: pla:Plav_3533 hypothetical protein. | 0.948 |
Caul_3818 | Caul_3820 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_3014 cobyrinic acid ac-diamide synthase. | KEGG: pla:Plav_3534 hypothetical protein. | 0.909 |
Caul_3818 | Caul_3821 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_3014 cobyrinic acid ac-diamide synthase. | KEGG: xau:Xaut_0756 putative conjugal transfer protein precursor. | 0.890 |
Caul_3818 | Caul_3822 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_3014 cobyrinic acid ac-diamide synthase. | PFAM: protein of unknown function DUF736; KEGG: xau:Xaut_2872 protein of unknown function DUF736. | 0.776 |
Caul_3818 | Caul_3823 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_3014 cobyrinic acid ac-diamide synthase. | PFAM: Lytic transglycosylase catalytic; KEGG: xau:Xaut_2873 lytic transglycosylase catalytic. | 0.745 |
Caul_3818 | Caul_3824 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_3014 cobyrinic acid ac-diamide synthase. | KEGG: xau:Xaut_0752 hypothetical protein. | 0.719 |
Caul_3818 | Caul_3826 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_3014 cobyrinic acid ac-diamide synthase. | KEGG: xau:Xaut_0750 hypothetical protein. | 0.712 |
Caul_3818 | Caul_3831 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_3014 cobyrinic acid ac-diamide synthase. | TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: xau:Xaut_2882 P-type conjugative transfer protein TrbJ. | 0.609 |
Caul_3818 | Caul_3832 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_3014 cobyrinic acid ac-diamide synthase. | KEGG: xau:Xaut_2999 hypothetical protein. | 0.606 |
page 1 of 6