STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_4535PFAM: inositol monophosphatase; KEGG: ccr:CC_0308 inositol monophosphatase family protein. (261 aa)    
Predicted Functional Partners:
Caul_0746
PFAM: inositol monophosphatase; KEGG: ccr:CC_3269 putative myo-inositol-1(or 4)-monophosphatase.
  
  
 
0.927
Caul_4536
KEGG: ccr:CC_0307 hypothetical protein.
     0.922
Caul_2987
KEGG: xac:XAC1024 non-hemolytic phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756.
     
  0.900
Caul_2997
KEGG: ccr:CC_3031 phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756.
     
  0.900
Caul_4534
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: ccr:CC_0309 PmbA protein.
       0.823
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
 
 0.586
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
   0.571
nusG
NusG antitermination factor; Participates in transcription elongation, termination and antitermination.
   
 
 0.562
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
   
   0.558
Caul_4533
PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: lpc:LPC_0848 FAD linked oxidase.
       0.518
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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