STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_2007PFAM: integrase family protein; KEGG: acr:Acry_3506 phage integrase family protein. (313 aa)    
Predicted Functional Partners:
Caul_2006
PFAM: integrase family protein; KEGG: acr:Acry_3507 phage integrase family protein.
     0.946
Caul_2008
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: acr:Acry_3266 phage integrase family protein; Belongs to the 'phage' integrase family.
 
    
0.841
Caul_2010
KEGG: bbt:BBta_7395 hypothetical protein.
 
     0.801
Caul_2009
KEGG: rpc:RPC_3921 antirestriction protein; ArdC.
       0.773
Caul_2230
PFAM: integrase family protein; KEGG: acr:Acry_3507 phage integrase family protein.
 
     0.772
Caul_2005
PFAM: domain of unknown function DUF1738; KEGG: mlo:mlr6154 antirestriction protein.
       0.592
Caul_2011
SMART: ParB domain protein nuclease; KEGG: mlo:mlr6157 similar to partitioning protein.
 
  
 0.562
xerD
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.470
Caul_0536
KEGG: swi:Swit_1978 hypothetical protein.
  
     0.435
Caul_3229
PFAM: Prephenate dehydrogenase; TrkA-N domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: ccr:CC_2224 cyclohexadienyl dehydrogenase / prephenate dehydrogenase.
  
    0.402
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.