STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Abu_1249DegT/DnrJ/EryC1/StrS aminotransferase; Pfam match to PF01041 DegT_DnrJ_EryC1, score 245.6, E-value 9.3E-071; Belongs to the DegT/DnrJ/EryC1 family. (378 aa)    
Predicted Functional Partners:
lpxK
Lipid A biosynthesis protein LpxK; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
       0.802
nadE
NH(3)-dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.
       0.802
Abu_1247
Conserved hypothetical protein.
       0.775
Abu_1246
Hypothetical protein.
       0.773
Abu_1253
DnaJ domain protein; Pfam match to PF00226 DnaJ, score 51.8, E-value 9E-015.
  
   0.708
Abu_1251
Hypothetical protein.
       0.691
Abu_1252
Hypothetical protein; Pfam match to PF04324 Fer2_BFD, score 34.9, E-value 2.6E-007.
       0.691
Abu_1816
dTDP-glucose 4,6-dehydratase; Pfam match to PF01370 Epimerase, score 271.8, E-value 1.2E-078; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.521
Abu_0662
Conserved hypothetical protein; Pfam match to PF01408 GFO_IDH_MocA, score 51.9, E-value 5.4E-014.
  
  
 0.501
Abu_0692
Putative hexose epimerase; Pfam match to PF02350 Epimerase_2, score 481.9, E-value 6.9E-142; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.496
Your Current Organism:
Arcobacter butzleri
NCBI taxonomy Id: 367737
Other names: A. butzleri RM4018, Arcobacter butzleri RM4018, Arcobacter butzleri str. RM4018, Arcobacter butzleri strain RM4018
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