STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpAPenicillin-binding protein 1A; Pfam matches to PF00912 Transgly, score 281.2, E-value 1.9E-081, and to PF00905 Transpeptidase, score 115.2, E-value 1.7E-031. (659 aa)    
Predicted Functional Partners:
dacA
Serine-type D-Ala-D-Ala carboxypeptidase; Pfam match to PF00768 Peptidase_S11, score 153.4, E-value 5.5E-043.
  
 
 0.926
ftsW
Cell division protein FtsW; Pfam match to PF01098 FTSW_RODA_SPOVE, score 272, E-value 1.1E-078.
 
 
0.912
pbpC
Penicillin-binding protein; Pfam matches to PF00905 Transpeptidase, score 230.4, E-value 3.5E-066, and to PF03717 PBP_dimer, score 108.6, E-value 1.7E-029.
 
 
 0.883
pbpB
Penicillin-binding protein; Pfam match to PF00905 Transpeptidase, score 248.9, E-value 9.6E-072; Belongs to the SEDS family.
 
 
 
 0.811
Abu_1901
ABC transporter, ATP-binding protein; Pfam match to PF00005 ABC_tran, score 143.7, E-value 4.4E-040.
       0.800
pgm
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.779
mraY
phospho-N-acetylmuramoyl-pentapeptide transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
 
  
 0.776
mltG
4-amino-4-deoxychorismate lyase PabC; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
   
 0.752
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
  
 0.744
mrdB
Pfam match to PF01098 FTSW_RODA_SPOVE, score 300.1, E-value 3.8E-087; Belongs to the SEDS family.
  
 
 
 0.723
Your Current Organism:
Arcobacter butzleri
NCBI taxonomy Id: 367737
Other names: A. butzleri RM4018, Arcobacter butzleri RM4018, Arcobacter butzleri str. RM4018, Arcobacter butzleri strain RM4018
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