STRINGSTRING
ppp protein (Bifidobacterium adolescentis) - STRING interaction network
"ppp" - Phosphoprotein phosphatase in Bifidobacterium adolescentis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pppPhosphoprotein phosphatase (286 aa)    
Predicted Functional Partners:
pknA2
Serine-threonine protein kinase pknA2 (732 aa)
  0.970
pknA
Serine-threonine protein kinase (314 aa)
 
  0.970
BAD_0038
Serine-threonine protein kinase (686 aa)
  0.970
BAD_1612
Hypothetical protein (718 aa)
 
  0.970
BAD_1313
Hypothetical protein (406 aa)
 
          0.893
BAD_1310
Serine_threonine protein kinase (473 aa)
 
          0.870
BAD_1314
Hypothetical protein (823 aa)
              0.859
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (94 aa)
   
 
    0.805
garA
Signal transduction protein (145 aa)
 
 
  0.784
guaB
Inosine-5’-monophosphate dehydrogenase (514 aa)
     
    0.761
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis, B. adolescentis ATCC 15703, Bifidobacterium adolescentis, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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