STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABN56246.1DNA-directed RNA polymerase, subunit B; PFAM: RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; KEGG: mhu:Mhun_0051 DNA-directed RNA polymerase. (604 aa)    
Predicted Functional Partners:
ABN56247.1
KEGG: mhu:Mhun_0052 DNA-directed RNA polymerase, subunit A'; TIGRFAM: DNA-directed RNA polymerase subunit A'; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein.
 0.998
ABN56245.1
PFAM: RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 3; KEGG: mhu:Mhun_0050 DNA-directed RNA polymerase.
 
 0.997
ABN56234.1
DNA-directed RNA polymerase, subunit A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 0.996
ABN56248.1
KEGG: mhu:Mhun_0053 DNA-directed RNA polymerase, subunit A''; TIGRFAM: DNA-directed RNA polymerase, subunit A''; PFAM: RNA polymerase Rpb1, domain 5.
 
 0.995
rpoD
DNA-directed RNA polymerase, subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.
 
 0.990
ABN56232.1
PFAM: RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 3; KEGG: mhu:Mhun_0050 DNA-directed RNA polymerase; Belongs to the RNA polymerase beta chain family.
 
 0.989
rpoA2
SSU ribosomal protein S2P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 0.986
ABN56244.1
PFAM: RNA polymerase subunit, RPB5; KEGG: mhu:Mhun_0049 RNA polymerase subunit, RPB5.
 
 0.978
ABN56250.1
TIGRFAM: NusA family KH domain protein; PFAM: KH, type 2 domain protein; KEGG: mhu:Mhun_0055 NusA family KH domain protein.
 
 
 0.977
ABN57734.1
DNA-directed RNA polymerase, subunit K; PFAM: RNA polymerase Rpb6; KEGG: mhu:Mhun_2894 RNA polymerase Rpb6.
 
 0.976
Your Current Organism:
Methanoculleus marisnigri
NCBI taxonomy Id: 368407
Other names: M. marisnigri JR1, Methanoculleus marisnigri JR1, Methanoculleus marisnigri str. JR1, Methanoculleus marisnigri strain JR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.