STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemLTIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: mhu:Mhun_2560 glutamate-1-semialdehyde-2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily. (415 aa)    
Predicted Functional Partners:
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
 0.999
ABN56914.1
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: mhu:Mhun_2561 porphobilinogen synthase; Belongs to the ALAD family.
 
 
 0.999
ABN56916.1
Hydroxymethylbilane synthase; KEGG: mhu:Mhun_2559 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase.
 
  
 0.996
ABN56917.1
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mhu:Mhun_2558 uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
   
 0.981
ABN56912.1
TIGRFAM: siroheme synthase; KEGG: mhu:Mhun_2563 siroheme synthase.
 
   
 0.912
ABN56472.1
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: mhu:Mhun_2267 uroporphyrinogen-III synthase-like.
  
  
 0.728
ABN57207.1
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mba:Mbar_A3381 hypothetical protein.
  
  
 0.679
ABN56156.1
KEGG: mhu:Mhun_3054 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family.
  
  
 0.650
ABN56121.1
dTDP-4-dehydrorhamnose reductase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: mma:MM1168 dTDP-4-dehydrorhamnose reductase.
  
    0.624
ABN57658.1
PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mhu:Mhun_0668 cobalamin (vitamin B12) biosynthesis CbiX protein.
 
   
 0.607
Your Current Organism:
Methanoculleus marisnigri
NCBI taxonomy Id: 368407
Other names: M. marisnigri JR1, Methanoculleus marisnigri JR1, Methanoculleus marisnigri str. JR1, Methanoculleus marisnigri strain JR1
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