STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
truAtRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family. (270 aa)    
Predicted Functional Partners:
rpoD
DNA-directed RNA polymerase, subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.
  
  
 0.971
ABN58223.1
PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: mhu:Mhun_2401 PHP-like.
       0.957
rps17
SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 
 0.886
truB
tRNA pseudouridine synthase B; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
 
 
 0.825
ABN55987.1
PFAM: beta-lactamase domain protein; KEGG: mhu:Mhun_2460 beta-lactamase-like.
 
 
 
 0.809
ABN57980.1
PFAM: Rhodanese domain protein; KEGG: det:DET1392 rhodanese-like domain protein.
   
 
 0.796
ABN58249.1
PFAM: beta-lactamase domain protein; Rhodanese domain protein; KEGG: mac:MA2320 metallo-beta-lactamase.
   
 
 0.796
ABN58222.1
TIGRFAM: dihydropteroate synthase-related protein; PFAM: dihydropteroate synthase, DHPS; KEGG: mhu:Mhun_2402 dihydropteroate synthase-related protein synthase-related protein.
  
  
 0.795
rpl37e
LSU ribosomal protein L37E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.
  
 
   0.779
ABN55989.1
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mhu:Mhun_0874 protein tyrosine phosphatase.
   
   0.775
Your Current Organism:
Methanoculleus marisnigri
NCBI taxonomy Id: 368407
Other names: M. marisnigri JR1, Methanoculleus marisnigri JR1, Methanoculleus marisnigri str. JR1, Methanoculleus marisnigri strain JR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.