STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acyPPFAM: acylphosphatase; KEGG: pai:PAE1232 acylphosphatase, putative. (90 aa)    
Predicted Functional Partners:
Tpen_0893
TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: pai:PAE2867 acetyl-coenzyme A synthetase.
     
 0.904
Tpen_1611
PFAM: AMP-dependent synthetase and ligase; KEGG: pai:PAE2867 acetyl-coenzyme A synthetase.
     
 0.904
Tpen_0109
KEGG: pab:PAB2113 hypothetical protein.
    
 0.901
Tpen_0336
PFAM: CoA-binding domain protein; KEGG: pfu:PF1838 hypothetical protein.
    
 0.901
Tpen_0602
PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: mst:Msp_0919 predicted acyl-CoA synthetase.
    
 0.901
Tpen_1053
PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: pai:PAE3466 molybdenum cofactor biosynthesis protein.
       0.732
Tpen_1054
TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: afu:AF0931 molybdenum cofactor biosynthesis protein.
       0.732
Tpen_1055
PFAM: extracellular solute-binding protein, family 1; KEGG: ade:Adeh_4136 ABC sugar transporter, periplasmic ligand binding protein.
       0.562
Tpen_1050
Hypothetical protein.
       0.536
Tpen_1051
PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: mth:MTH577 hypothetical protein.
       0.536
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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