STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_1105PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0225 ABC transporter related. (541 aa)    
Predicted Functional Partners:
Tpen_1104
PFAM: cobalt transport protein; KEGG: oih:OB0149 hypothetical conserved protein.
 
 
 0.943
Tpen_1545
PFAM: cobalt transport protein; KEGG: pab:PAB2261 cobalt transport system permease protein.
 
 
 0.891
Tpen_0066
PFAM: cobalt transport protein; KEGG: bcl:ABC1935 cobalt ABC transporter permease.
 
 
 0.889
Tpen_1535
PFAM: cobalt transport protein; KEGG: sav:SAV2683 conserved hypothetical protein.
 
 0.867
Tpen_0712
PFAM: cobalt transport protein; KEGG: tte:TTE1588 ABC-type cobalt transport system, permease component CbiQ and related transporters.
 
 
 0.859
Tpen_0007
PFAM: cobalt transport protein; KEGG: pho:PH0131 cobalt transport system permease protein.
 
 
 0.845
Tpen_1103
KEGG: mhu:Mhun_1233 hypothetical protein.
       0.779
Tpen_1491
PFAM: BioY protein; KEGG: afu:AF1169 biotin synthase.
 
 
 
 0.741
Tpen_1741
PFAM: cobalt transport protein; KEGG: rpc:RPC_1949 cobalt ABC transporter CbiQ, permease subunit.
  
 
 0.724
Tpen_1739
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: afu:AF1843 cobalamin biosynthesis protein.
  
 
 0.669
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.