STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_1195PFAM: LmbE family protein; KEGG: pfu:PF0354 hypothetical protein. (270 aa)    
Predicted Functional Partners:
Tpen_1196
PFAM: amino acid permease-associated region; KEGG: mta:Moth_1345 amino acid permease-associated region.
     
 0.664
Tpen_1194
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sat:SYN_00826 SAM-dependent methyltransferase.
 
     0.625
Tpen_1743
PFAM: glycosyl transferase, group 1; KEGG: afu:AF0602 LPS biosynthesis protein, putative.
 
  
 0.549
Tpen_1193
Predicted alanyl-tRNA synthetase-like metal-dependent hydrolase; PFAM: Threonyl/alanyl tRNA synthetase, SAD; KEGG: sso:SSO0450 alanyl-tRNA synthetase truncated homolog (AlaS-like1).
  
    0.547
cysS
KEGG: ape:APE1592 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia.
  
  
 0.492
Tpen_1511
Alpha-galactosidase; PFAM: glycoside hydrolase, family 4; KEGG: tma:TM1834 alpha-glucosidase.
 
     0.483
Tpen_1744
PFAM: glycosyl transferase, group 1; KEGG: rxy:Rxyl_0690 glycosyl transferase, group 1.
 
  
 0.435
Tpen_1192
PFAM: protein of unknown function DUF6, transmembrane; KEGG: plu:plu1408 hypothetical protein.
       0.433
Tpen_1821
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pho:PH1901 3-oxoacyl-[acyl-carrier protein] reductase.
 
   
 0.431
Tpen_1717
PFAM: glycosyl transferase, group 1; KEGG: pfu:PF1361 glycosyl transferase.
 
  
 0.425
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.