STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_1738PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: afu:AF0595 polysaccharide biosynthesis protein, putative. (514 aa)    
Predicted Functional Partners:
Tpen_1719
PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: afu:AF0596 UDP-glucose dehydrogenase.
  
  
 0.984
Tpen_1712
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.982
Tpen_1715
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pfu:PF0794 UDP-N-acetylglucosamine 2-epimerase.
  
  
 0.878
Tpen_1215
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: reh:H16_B0034 UDP-N-acetyl-D-mannosamine 6-dehydrogenase.
  
  
 0.750
Tpen_0412
PFAM: glycosyl transferase, family 4; KEGG: mth:MTH590 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphstransferase.
 
  
 0.699
Tpen_0110
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pai:PAE2053 pleiotropic regulatory protein, conjectural; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.670
Tpen_1713
Hypothetical protein; KEGG: sto:ST1970 dTDP-4-dehydrorhamnose reductase.
  
  
 0.647
Tpen_1250
PFAM: Nucleotidyl transferase; KEGG: pfu:PF1058 glucose-1-phosphate thymidylyltransferase.
 
  
 0.636
Tpen_0205
PFAM: glycosyl transferase, family 2; KEGG: cch:Cag_1316 glycosyl transferase.
 
  
 0.635
Tpen_1717
PFAM: glycosyl transferase, group 1; KEGG: pfu:PF1361 glycosyl transferase.
  
  
 0.611
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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