SFJ06559.1 protein (Terrisporobacter glycolicus)

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Score

SFJ06559.1

ATP-binding cassette, subfamily F, uup. (636 aa)

Predicted Functional Partners:

rplU

0.730

rplD

0.729

rpsO

0.721

rpsC

0.719

rplM

0.715

rplC

0.711

rpmH

0.707

rplR

0.707

rpsG

0.706

rplT

0.706

Your Current Organism:

Terrisporobacter glycolicus

NCBI taxonomy Id: 36841
Other names: ATCC 14880, BCRC 14553, Clostridium glycolicum, Clostridium glycolinum, NCIMB 10632, NCTC 13026, T. glycolicus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFJ06559.1	rplC	SAMN02910355_0851	SAMN02910355_3847	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.711
SFJ06559.1	rplD	SAMN02910355_0851	SAMN02910355_3848	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.729
SFJ06559.1	rplM	SAMN02910355_0851	SAMN02910355_3881	ATP-binding cassette, subfamily F, uup.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.715
SFJ06559.1	rplR	SAMN02910355_0851	SAMN02910355_3863	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.707
SFJ06559.1	rplT	SAMN02910355_0851	SAMN02910355_3419	ATP-binding cassette, subfamily F, uup.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.706
SFJ06559.1	rplU	SAMN02910355_0851	SAMN02910355_0328	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.730
SFJ06559.1	rpmH	SAMN02910355_0851	SAMN02910355_3683	ATP-binding cassette, subfamily F, uup.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.707
SFJ06559.1	rpsC	SAMN02910355_0851	SAMN02910355_3853	ATP-binding cassette, subfamily F, uup.	Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.719
SFJ06559.1	rpsG	SAMN02910355_0851	SAMN02910355_0012	ATP-binding cassette, subfamily F, uup.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.706
SFJ06559.1	rpsO	SAMN02910355_0851	SAMN02910355_0787	ATP-binding cassette, subfamily F, uup.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.721
rplC	SFJ06559.1	SAMN02910355_3847	SAMN02910355_0851	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ATP-binding cassette, subfamily F, uup.	0.711
rplC	rplD	SAMN02910355_3847	SAMN02910355_3848	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN02910355_3847	SAMN02910355_3881	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
rplC	rplR	SAMN02910355_3847	SAMN02910355_3863	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.998
rplC	rplT	SAMN02910355_3847	SAMN02910355_3419	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.990
rplC	rplU	SAMN02910355_3847	SAMN02910355_0328	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.988
rplC	rpmH	SAMN02910355_3847	SAMN02910355_3683	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.952
rplC	rpsC	SAMN02910355_3847	SAMN02910355_3853	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.997
rplC	rpsG	SAMN02910355_3847	SAMN02910355_0012	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.993
rplC	rpsO	SAMN02910355_3847	SAMN02910355_0787	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.988