STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC64852.1Nickel-dependent lactate racemase. (417 aa)    
Predicted Functional Partners:
SKC84175.1
Hypothetical protein.
 
  
 0.895
SKC84178.1
Uncharacterized protein.
 
  
 0.888
SKC85158.1
FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase.
    
 0.721
SKC70416.1
D-lactate dehydrogenase (cytochrome).
    
 0.714
SKC84184.1
TIGR00299 family protein.
 
  
 0.703
SKC82309.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
   
  0.666
SKC86507.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
   
  0.666
SKC80930.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
   
  0.665
SKC84182.1
Uncharacterized conserved protein.
 
  
 0.652
SKC40250.1
Malate/lactate dehydrogenase.
     
 0.596
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.