STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU44826.1Radical SAM superfamily protein. (436 aa)    
Predicted Functional Partners:
KPU44827.1
Hypothetical protein.
 
     0.948
KPU44828.1
Hypothetical protein.
 
     0.937
ycgJ_1
Putative methyltransferase YcgJ.
 
 0.905
miaB_2
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase.
 
    
0.841
KPU44639.1
V4R domain protein.
  
 
 0.818
KPU44822.1
Radical SAM superfamily protein.
 
    
0.807
rimO_1
Ribosomal protein S12 methylthiotransferase RimO.
 
    
0.804
KPU43692.1
Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
  
 
 0.514
KPU44829.1
TSCPD domain protein.
       0.458
ubiA
4-hydroxybenzoate octaprenyltransferase; Belongs to the UbiA prenyltransferase family.
   
 
 0.405
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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