STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU44271.1Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family. (451 aa)    
Predicted Functional Partners:
metH_16
Methionine synthase.
 
    0.873
KPU42480.1
Hypothetical protein.
 
     0.772
KPU43734.1
Hypothetical protein.
  
     0.740
hemE_5
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.736
KPU43188.1
Methylcobalamin:coenzyme M methyltransferase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.727
yvoA
HTH-type transcriptional repressor YvoA.
  
     0.727
KPU46125.1
Hypothetical protein.
  
     0.679
yurK
Putative HTH-type transcriptional regulator YurK.
  
     0.664
nasF
uroporphyrinogen-III C-methyltransferase.
  
 
 0.642
KPU45544.1
Hypothetical protein.
  
     0.605
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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