STRINGSTRING
POPTR_0001s00240.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s00240.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s00240.1Predicted protein (214 aa)    
Predicted Functional Partners:
POPTR_0015s05340.1
Predicted protein (377 aa)
           
  0.553
POPTR_0012s03900.1
Uncharacterized protein (367 aa)
           
  0.553
POPTR_0017s13950.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9N208_POPTR] (363 aa)
     
 
  0.531
POPTR_0006s08610.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9HBM2_POPTR] (369 aa)
     
 
  0.531
POPTR_0004s10250.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9H3Q2_POPTR] (361 aa)
     
 
  0.531
POPTR_0003s09490.1
Predicted protein (377 aa)
           
  0.529
POPTR_0001s02010.1
Predicted protein (378 aa)
           
  0.529
POPTR_0010s18460.1
Predicted protein (220 aa)
           
  0.497
POPTR_0008s07930.1
Predicted protein (222 aa)
           
  0.497
HB1
Class III HD-Zip protein 1 [source-UniProtKB/TrEMBL;Acc-Q5D1M6_POPTR] (855 aa)
           
  0.469
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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