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POPTR_0001s00320.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s00320.1" - Flavin-containing monooxygenase in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s00320.1Flavin-containing monooxygenase (452 aa)    
Predicted Functional Partners:
POPTR_0003s16530.1
Serine/threonine protein kinase PBS1; Belongs to the protein kinase superfamily (462 aa)
           
  0.740
POPTR_0001s13420.1
Serine/threonine protein kinase PBS1; Belongs to the protein kinase superfamily (462 aa)
           
  0.740
POPTR_0014s13990.1
Uncharacterized protein; Belongs to the protein kinase superfamily (398 aa)
           
  0.675
POPTR_0016s14610.1
Leucine-rich repeat protein kinase family protein (626 aa)
           
  0.553
POPTR_0013s02310.1
Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding (862 aa)
           
  0.552
POPTR_0005s03580.1
Uncharacterized protein (804 aa)
           
  0.552
POPTR_0010s10590.1
Uncharacterized protein; Belongs to the protein kinase superfamily (273 aa)
           
  0.542
POPTR_0008s14520.1
annotation not available (242 aa)
           
  0.542
POPTR_0019s06060.1
Uncharacterized protein (1202 aa)
         
  0.498
POPTR_0005s02630.1
Respiratory burst oxidase protein B (876 aa)
           
  0.461
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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