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POPTR_0001s00830.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s00830.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s00830.1Predicted protein (520 aa)    
Predicted Functional Partners:
POPTR_0015s10510.1
Uncharacterized protein (176 aa)
     
 
  0.485
POPTR_0012s09750.1
Predicted protein (251 aa)
     
 
  0.485
POPTR_0012s09740.1
Annotation not available (171 aa)
     
 
  0.485
POPTR_0001s36090.1
Predicted protein (834 aa)
     
   
  0.453
POPTR_0001s36100.1
Predicted protein (303 aa)
           
  0.440
POPTR_0011s11200.1
Predicted protein (606 aa)
           
  0.426
POPTR_0001s40260.1
Predicted protein (125 aa)
           
  0.426
POPTR_0002s23540.1
ABC transporter family protein [source-UniProtKB/TrEMBL;Acc-B9GNC5_POPTR] (352 aa)
           
  0.426
POPTR_0025s00740.1
Predicted protein (1086 aa)
     
 
  0.418
POPTR_0018s07380.1
Putative uncharacterized protein PtrSuSY1Sucrose synthase 1 [source-UniProtKB/TrEMBL;Acc-B9INC3_POPTR]; Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways (805 aa)
     
 
  0.418
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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