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POPTR_0001s01780.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s01780.1" - Pentatricopeptide repeat-containing family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s01780.1Pentatricopeptide repeat-containing family protein (602 aa)    
Predicted Functional Partners:
POPTR_0013s03000.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGQ4_POPTR] (330 aa)
     
   
  0.871
Lhca6
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated (261 aa)
     
   
  0.712
POPTR_0019s11940.1
Uncharacterized protein (365 aa)
     
        0.701
POPTR_0006s02810.1
DICARBOXYLATE DIIRON 1 family protein (405 aa)
     
        0.682
POPTR_0016s02570.1
DICARBOXYLATE DIIRON 1 family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI54_POPTR] (428 aa)
     
        0.673
POPTR_0005s17540.1
Uncharacterized protein (274 aa)
           
  0.660
POPTR_0005s26230.1
Uncharacterized protein (300 aa)
           
  0.603
POPTR_0002s02210.1
annotation not available (250 aa)
           
  0.603
POPTR_0018s05820.1
annotation not available (490 aa)
           
  0.598
POPTR_0008s16020.1
annotation not available (370 aa)
           
  0.598
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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