STRINGSTRING
POPTR_0001s02130.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s02130.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s02130.1Predicted protein (332 aa)    
Predicted Functional Partners:
POPTR_0018s09190.1
Predicted protein (1082 aa)
      
 
  0.953
POPTR_0003s13170.1
MAP kinase family protein (366 aa)
      
  0.933
POPTR_0001s27850.1
Annotation not available (117 aa)
      
  0.933
POPTR_0001s28170.1
Predicted protein (1616 aa)
      
  0.927
POPTR_0001s06680.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002304771.1] (1621 aa)
      
  0.927
POPTR_0010s03070.1
Predicted protein (562 aa)
    
0.908
POPTR_0008s20530.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFD4_POPTR] (562 aa)
    
0.908
POPTR_0002s16400.1
Predicted protein (372 aa)
    
0.906
POPTR_0014s08450.1
Predicted protein (372 aa)
    
0.906
POPTR_0009s07050.1
Predicted protein (371 aa)
    
0.904
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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