• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0001s02300.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s02300.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s02300.1Uncharacterized protein (411 aa)    
Predicted Functional Partners:
POPTR_0009s07230.1
F-box family protein (405 aa)
           
  0.733
POPTR_0001s28050.1
F-box family protein (368 aa)
           
  0.733
POPTR_0016s15070.1
Hexosyltransferase; Glycosyltransferase, CAZy family GT8; Belongs to the glycosyltransferase 8 family (452 aa)
           
  0.729
POPTR_0006s11520.1
Hexosyltransferase; Glycosyltransferase; Belongs to the glycosyltransferase 8 family (590 aa)
           
  0.729
POPTR_0001s23980.1
Oxidoreductase family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8M4_POPTR] (368 aa)
     
   
0.695
POPTR_0006s12460.1
Uncharacterized protein; Rhodanese/Cell cycle control phosphatase superfamily protein (87 aa)
     
      0.695
POPTR_0017s05620.1
Electron transfer flavoprotein-ubiquinone oxidoreductase (424 aa)
     
   
  0.687
POPTR_0014s06280.1
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (397 aa)
           
  0.680
POPTR_0015s12080.1
110 kDa 4SNc-Tudor domain family protein (984 aa)
     
 
  0.671
POPTR_0012s11300.1
Uncharacterized protein (970 aa)
       
 
  0.667
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (10%) [HD]