STRINGSTRING
POPTR_0001s02370.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s02370.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s02370.1Predicted protein (294 aa)    
Predicted Functional Partners:
POPTR_0009s11920.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8S6_POPTR] (170 aa)
   
          0.526
POPTR_0009s16190.1
Predicted protein (109 aa)
   
          0.525
POPTR_0001s24310.1
Uncharacterized protein (103 aa)
   
          0.524
POPTR_0475s00200.1
Uncharacterized protein (311 aa)
   
          0.523
POPTR_0011s13380.1
Predicted protein (153 aa)
   
          0.523
POPTR_0002s09830.1
Predicted protein (275 aa)
   
          0.521
POPTR_0001s44050.1
Uncharacterized protein (137 aa)
   
          0.518
POPTR_0002s00610.1
Predicted protein (287 aa)
   
          0.516
POPTR_0014s10090.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAJ1_POPTR] (294 aa)
   
          0.515
POPTR_0008s04430.1
Predicted protein (251 aa)
   
          0.515
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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