STRINGSTRING
POPTR_0001s02660.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s02660.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s02660.1Predicted protein (322 aa)    
Predicted Functional Partners:
POPTR_0001s41800.1
Predicted protein (747 aa)
     
 
    0.544
POPTR_0002s09010.1
Histone acetyltransferase [source-UniProtKB/TrEMBL;Acc-B9GUG6_POPTR] (445 aa)
     
 
    0.532
POPTR_0015s08770.1
Predicted protein (215 aa)
     
 
    0.510
POPTR_0015s08780.1
Uncharacterized protein (977 aa)
     
 
    0.499
POPTR_0015s04800.1
Ssu72-like protein [source-UniProtKB/TrEMBL;Acc-B4X6W4_POPTR] (128 aa)
           
  0.497
POPTR_0015s12710.1
Predicted protein (517 aa)
     
 
    0.463
POPTR_0016s12400.1
Predicted protein (292 aa)
           
  0.426
POPTR_0010s19580.1
Predicted protein (294 aa)
           
  0.426
POPTR_0008s06870.1
Predicted protein (307 aa)
           
  0.426
POPTR_0006s10170.1
Predicted protein (325 aa)
           
  0.426
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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