STRINGSTRING
POPTR_0001s03310.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s03310.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s03310.1Predicted protein (484 aa)    
Predicted Functional Partners:
POPTR_0420s00220.1
Uncharacterized protein (188 aa)
   
          0.527
POPTR_0014s11580.1
Predicted protein (126 aa)
   
          0.514
POPTR_0015s05170.1
Predicted protein (355 aa)
   
        0.513
POPTR_0014s12990.1
Predicted protein (202 aa)
   
          0.513
POPTR_0002s19710.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHK5_POPTR] (127 aa)
   
          0.513
POPTR_0004s08950.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHY1_POPTR] (518 aa)
   
        0.509
POPTR_0008s11440.1
Uncharacterized protein (272 aa)
   
          0.509
POPTR_0002s02900.1
Uncharacterized protein (411 aa)
   
          0.508
POPTR_0013s09500.1
Hypothetical protein (287 aa)
   
          0.506
POPTR_0019s15340.1
Uncharacterized protein (173 aa)
   
          0.502
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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